SNP Profiles matching ICS 1

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
1._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
2._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
3._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
11._PA_70_[PER]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._GC-04-053-3-17	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
13._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
14._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
15._MARPER_45	TT	AA	GG	CT	-	AA	CC	-	CT	-	AA	AA	-	AG
16._RUQ_847	TT	AG	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
17._RUQ_847	_	AA	GG	CT	_	_	_	TT	_	_	_	_	TT	AG
18._RUQ_817	_	AA	GG	CT	_	_	_	TT	_	_	_	_	TT	AG
19._RUQ_847	TT	AG	GG	CT	TT	AA	CC	TT	CT	CT	AA	AA	TT	AG
20._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
21._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
22._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
23._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
24._MARPER_34	TT	AA	GG	TT	-	AA	CC	-	CT	-	AA	AA	-	AG
25._MARPER_55	TT	AA	GG	CT	-	AA	CC	-	CT	-	AA	AA	-	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
1._ICS_1	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
2._ICS_1	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
3._ICS_1	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
4._ICS_1	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
5._ICS_1	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
6._NA	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
7._NA	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
8._NA	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
9._NA	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
10._NA	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
11._PA_70_[PER]	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
12._GC-04-053-3-17	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
13._ICS_1	TT	AA	GG	TT	CC	GT	GG	TT	AC	_	TT	TT	CC	GG
14._NA	TT	AA	GG	TT	CC	GT	GG	TT	AC	_	TT	TT	CC	GG
15._MARPER_45	TT	AA	GG	-	CC	GT	GG	TT	-	CC	-	TT	CC	GG
16._RUQ_847	TT	AA	GG	TT	CC	GT	GG	TT	AC	CC	TT	TT	CC	GG
17._RUQ_847	_	_	_	_	CC	GT	_	TT	AA	CC	TT	TT	CC	_
18._RUQ_817	_	_	_	_	CC	GT	_	TT	AA	CC	TT	TT	CC	_
19._RUQ_847	TT	AA	GG	TT	CC	GT	GG	CT	AC	CC	TT	CT	CC	GG
20._OC_61_[VEN]	TT	AA	GG	TT	CC	GG	GG	TT	CC	CC	TT	TT	CC	GG
21._OC_61_[VEN]	TT	AA	GG	TT	CC	GG	GG	TT	CC	CC	TT	TT	CC	GG
22._GC-05-039-1-39	TT	AA	GG	TT	CC	GG	GG	TT	CC	CC	TT	TT	CC	GG
23._GC-05-039-1-39	TT	AA	GG	TT	CC	GG	GG	TT	CC	CC	TT	TT	CC	GG
24._MARPER_34	TT	AA	GG	-	CC	GT	GG	CT	-	CC	-	CT	CC	GG
25._MARPER_55	TT	AA	GG	-	CC	GT	GG	CT	-	CC	-	CT	CC	GG

	29	30	31	32	33	34	35	36	37	38
_Input profile	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
1._ICS_1	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
2._ICS_1	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
3._ICS_1	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
4._ICS_1	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
5._ICS_1	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
6._NA	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
7._NA	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
8._NA	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
9._NA	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
10._NA	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
11._PA_70_[PER]	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
12._GC-04-053-3-17	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
13._ICS_1	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
14._NA	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
15._MARPER_45	-	CT	AG	-	-	-	GT	-	AT	-	X_X	X_X	X_X	X_X
16._RUQ_847	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
17._RUQ_847	AT	CT	AG	CG	AA	CC	GT	AA	_	_	X_X	X_X	X_X	X_X
18._RUQ_817	AT	CT	AG	CG	AA	CC	GT	AA	_	_	X_X	X_X	X_X	X_X
19._RUQ_847	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X	X_X	X_X
20._OC_61_[VEN]	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
21._OC_61_[VEN]	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
22._GC-05-039-1-39	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
23._GC-05-039-1-39	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X	X_X	X_X
24._MARPER_34	-	TT	AG	-	-	-	GT	-	AA	-	X_X	X_X	X_X	X_X
25._MARPER_55	-	CC	AA	-	-	-	GG	-	AT	-	X_X	X_X	X_X	X_X

Input profile: ICS_1

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

1._ICS_1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

3._ICS_1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

4._ICS_1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

5._ICS_1

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._ICS_1 NA

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

11._PA_70_[PER]

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._PA_70_[PER] GC-04-053-3-17

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

13._ICS_1

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

14._ICS_1 NA

identical
37 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

15._MARPER_45

identical
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 251A

Dapeng Zhang, 2014

16._ICS_1 RUQ_847

98.7 %
38 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._ICS_1 RUQ_847

97.7 %
22 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._ICS_5 RUQ_817

97.7 %
22 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._ICS_1 RUQ_847

94.7 %
38 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._OC_61_[VEN]

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 1 > FP

Dapeng Zhang, 2016

21._OC_61_[VEN]

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5139 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

22._OC_61_[VEN] GC-05-039-1-39

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

23._OC_61_[VEN] GC-05-039-1-39

90.8 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

24._MARPER_34

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 559

Dapeng Zhang, 2014

25._MARPER_55

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER C 249

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP429	29	TcSNP372	30	TcSNP242
31	TcSNP230	32	TcSNP226	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25